Tools

Galah process

process is used to run both the analyse and cluster commands in sequence.

Galah cluster

cluster is the primary command used to dereplicate genomes or contigs into clusters based on average nucleotide identity (ANI), choosing a single representative genome from each cluster.

Galah analyse

analyse is used to determine MIMAG quality scores for genomes based on their completeness, contamination and the presence of rRNA and tRNA genes.